SE0510039

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3004
  • Capsella rubella
  • SE0510039
  • Tc1/Mariner
  • St3
  • scaffold_6:12724111-12724354
  • TA
  • TACTCCCTC

Secondary structure and sequence

TSD    TIR
5'



3' 
             AATATATGATGTTTTAGAATTTTTTGTTGTTTCTGAAAGATTGATGTTGTATATTAAAAAATTAAAGCTATATTTTTACTTTATGCTTTTCAACACATGTCAGTTATCT
TACTCCCTCACAT                                                                                                             
|||||||||||||                                                                                                              
ATGAGGGAGGCAA                                                                                                             
             AGTTTTTCTAACTACAAAACCAAAAAAGTGTGTAATTCTATTTCATTTCGTAAACAAATACTTAATTAAATATTATTTAAAAACCATCTTTCTCTTTCATATTTGGTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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