SE0550042

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3007
  • Capsella rubella
  • SE0550042
  • PIF/harbinger
  • To5
  • scaffold_3:935677-935876
  • TAA
  • AGAGCATCCTCAATGC

Secondary structure and sequence

TSD    TIR
5'



3' 
TA   G A          ATA    TTAAA ATTAATCTTATGATTTCTTTAATAATTTAACTGAAAAAAGTGGATCTTATTATTTCTTTAATACCTTATATA
  AGA C TCCTCAATGC   AGCT     A                                                                        
  ||| | ||||||||||   ||||     |                                                                        A
  TCT G AGGAGTTACG   CTTA     G                                                                        
AA   G A          --A    ----- AATTGGACTAGGAATCGATTAAGATTAATTTTAAATTATGTATTAAGTTGGGATATATATTCTATCCCATGG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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