Plant MITE

SE0550046

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3011
Capsella rubella
SE0550046
PIF/harbinger
To2
scaffold_4:10619145-10619621
TTA
AGGGGGTGTTATTGG

Secondary structure and sequence

TSD TIR

5'

3'

TT               ATTCTAAC      A  A   A       ---------CTG   AAATCATAGATTGGATGATTTTAAAGGATTGTTTGAGAGTTTTATATAATCTTGTTGATTAGTTTTTTAAAGTCTTGTAAAGTCTCTCAAACAATCTCTGTATTTATAAGATACTTTTCATGACTTTATTTTGTAAAGAAGAGTGTTTAAAATCATAAACCAATAACATAAAATTTTAATTC
  AGGGGGTGTTATTGG        TTATAA GA TTT GATGACT            CTA                                                                                                                                                                                      
  |||||||||||||||        |||||| || ||| |||||||            |||                                                                                                                                                                                       
  TCCCCCACAATAACC        AATATT CT AAA TTACTGA            ATC                                                                                                                                                                                      
AT               AAACACTC      C  C   A       AATCTATAATCC   TTAGACAACAATAAGTTAGTTCTAAAATGTTTTGAGAAAATTTCAAACCACAATAATCAATAACTAAACATTTCTCAGTAAGGTTTAGAAGTATTTATACCCCAATAACCTATGTCTCAAAATATTTCAGTAATTTTCAAGACACAATAAGTTAATTTTGTTTTCTTAGATACTAACAATTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0550046

TTAGGGGGTGTTATTGGATTCTAACTTATAAAGAATTTAGATGACTCTGCTAAAATCATAGATTGGATGATTTTAAAGGATTGTTTGAGAGTTTTATATAATCTTGTTGATTAGTTTTTTAAAGTCTTGTAAAGTCTCTCAAACAATCTCTGTATTTATAAGATACTTTTCATGACTTTATTTTGTAAAGAAGAGTGTTTAAAATCATAAACCAATAACATAAAATTTTAATTCATTAACAATCATAGATTCTTTTGTTTTAATTGAATAACACAGAACTTTTAATGACTTTATAAAACTCTGTATCCAATAACCCCATATTTATGAAGATTTGGAATGACTCTTTACAAATCAATAACTAATAACACCAAACTTTAAAAGAGTTTTGTAAAATCTTGATTGAATAACAACAGATTCTACCTAATATCTAAAGTCATTAAAACTCCTTATAACTCACAAACCAATAACACCCCCTTA

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