SE0550049

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3014
  • Capsella rubella
  • SE0550049
  • PIF/harbinger
  • To20
  • scaffold_3:5986171-5986391
  • TAA
  • AGAGCAACTCCATTGG

Secondary structure and sequence

TSD    TIR
5'



3' 
TA   G  A     T   --CA     -   --------T   AAACTTA     TTGCCTATATTTA  GCATTATATTTAATGCAAATCAAGCACTTTTCATAAGCTTTGTTGTCTAAATTAAC
  AGA CA CTCCA TGG    TTGCT TAA         GGG       AGACA             TT                                                        
  ||| || ||||| |||    ||||| |||         |||       |||||             ||                                                         
  TCT GT GAGGT ACC    TTGGT CCC         TAA       GTAAA             AA                                                        
AA   G  A     T   AATC     A   TCCCACGAA   -------     -------------  AACGTAATTAAAAAATTTTTATTTAAATATTCATCGGGAATCAGAAACGAATTTCT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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