SE0550050

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3015
  • Capsella rubella
  • SE0550050
  • PIF/harbinger
  • To10
  • scaffold_5:12072985-12073123
  • TAA
  • AGACCATCCTCATTGGGGGTATCTTAGGAGGCTAAGATACCCCCACTTTTTCAAAGAAAGTATGTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA  AC                  C                                      A G  AT
  AG  CATCCTCATTGGGGGTAT TTAGGAGGCTAAGATACCCCCACTTTTTCAAAGAAAGT T TT  
  ||  |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||   
  TC  GTAGGAGTAACCCCCATA AATCCTCCGATTCTATGGGGGTGAAAAGGTTTCTTTTA G AA  
AA  CC                  A                                      - G  TA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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