SE0520056

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3021
  • Capsella rubella
  • SE0520056
  • Mutator
  • M5
  • scaffold_3:10985670-10986224
  • AAAATAAAA
  • GGGAAAAATGCCATAAAAATCCTGCAGAGTACGATTTCGTTGGTTTAAATCCCGAACTTTCCAACTGTTGATTTAAATCACAAACTTTCTGTTTACTCTCTCTTTAATATGAAACTTTAATTGACTTTGCCAATTTAGGCACATCGTTAAATCGCCAAACGGAGCAATTAAACGGGTTTGAATGTCATTAACGAAATCCGTCAAATACAAAATGAAACCGTTTTAACATAACCCAAACACTTAATCGATTCAACTTTTT

Secondary structure and sequence

TSD    TIR
5'



3'
AAAATAAAAC                        C      C                    C                                   C    T                         A                         G     T                      -    T  A    A                    CA               -                                   CCCCAAAA
          GGGAAAAATGCCATAAAAATCCTG AGAGTA GATTTCGTTGGTTTAAATCC GAACTTTCCAACTGTTGATTTAAATCACAAACTTT TGTT ACTCTCTCTTTAATATGAAACTTTA TTGACTTTGCCAATTTAGGCACATC TTAAA CGCCAAACGGAGCAATTAAACG GGTT GA TGTC TTAACGAAATCCGTCAAATA  AAATGAAACCGTTTT AACATAACCCAAACACTTAATCGATTCAACTTTTT        
          |||||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |||| || |||| ||||||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||         
          CCCTTTTTACGGTATTTTTAGGAC TCTCAT CTAAAGCAACTAAATTTAGG CTTGAGAGGTTGACAACTAAATTTAGTGTTTGAAA ACAA TGAGAGAGAAATTATATTTTGAAAT AACTGAAACGGTTAAATCCGTGTAG AATTT GCGGTTTGCCTCGTTAATTTGC CCAA CT ACAG AATTGCTTTAGGCAGTTTAT  TTTACTTTGGCAAAA TTGTATTGGGTTTGTGAATTAGCTAAGTTGAAAAA        
CAAAATAAAA                        C      A                    A                                   T    C                         C                         A     T                      T    T  -    C                    AC               A                                   CAATTCAC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End