Plant MITE

SE0550061

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3026
Capsella rubella
SE0550061
PIF/harbinger
To5
scaffold_1:16255748-16255947
TTA
AGGGCATCCTCAATGCATAATCCTTAA

Secondary structure and sequence

TSD TIR

5'

3'

TT   G            ATA        AAGT       ATGA   -- T   ------- TAGTTTAATTGAAAAAATGGATCTTATGATTTCCTTTAGTACCTTAT
  AGG CATCCTCAATGC   ATCCTTAA    GGATCTA    TTT  C TTA       A                                               
  ||| ||||||||||||   ||||||||    |||||||    |||  | |||       |                                                
  TCT GTAGGAGTTACG   TAGGAATT    GTACTAG    GAA  T ATG       A                                               
AT   G            -AC        ----       ----   TT G   AAAACCA TTTTAGATTATGTATTAAGTTGAGATATATATTCCATGCATACAATA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0550061

TTAGGGCATCCTCAATGCATAATCCTTAAAAGTGGATCTAATGATTTCTTTAATAGTTTAATTGAAAAAATGGATCTTATGATTTCCTTTAGTACCTTATATAACATACGTACCTTATATATAGAGTTGAATTATGTATTAGATTTTAACCAAAAGTAGTTTAAGGATCATGTTAAGGATCAGCATTGAGGATGGTCTTA

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