SE0550067

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3032
  • Capsella rubella
  • SE0550067
  • PIF/harbinger
  • To13
  • scaffold_7:514212-514388
  • TTA
  • AGAGCATGATTATCAAGGGGTTTTAACAAAATCTTAAGTTAAGAAAAGT

Secondary structure and sequence

TSD    TIR
5'



3'
TT   G   G    T           -  CA                     ACAA    AC          GATTAAATA      AT
  AGA CAT ATTA CAAGGGGTTTT AA  AAATCTTAAGTTAAGAAAAGT    AAAA  TAAGAAAAGT         TCTCTT  
  ||| ||| |||| ||||||||||| ||  |||||||||||||||||||||    ||||  ||||||||||         ||||||   
  TCT GTA TAAT GTTCCCCAAGA TT  TTTAGAATTCGATTTTTTTCA    TTTT  ATTCTTTTCA         AGAGAA  
AT   G   G    T           A  TA                     ATTC    CC          ATCAAATAC      CA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End