SE0550069

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3034
  • Capsella rubella
  • SE0550069
  • PIF/harbinger
  • To25
  • scaffold_2:12582840-12583250
  • TAA
  • AGGGCATGTCCAATGCAGGT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA   G   G       CA   ------------CTCATAACTA    C  AGAAATAAAAAGGAAAAAACTAAATCATTAGTCAATAATAAACTAAGAGATATCTCTTATAGAAGAAGTTTTTAGACAATTTGTTAAGTACATGTGTCACTACAAGAGAAGTCAGTTCTATTAATTTACCAAATGAAGTTTTTAAATATTTTTTTTATTATG
  AGG CAT TCCAATG  GGT                      GTAT TT                                                                                                                                                                  
  ||| ||| |||||||  |||                      |||| ||                                                                                                                                                                   
  TCT GTG AGGTTAC  CCA                      ATTA AA                                                                                                                                                                  
AA   G   G       --   CATACAATTATTTCAAAAAATC    -  AAATCAATATTTAATACATGAAAAATTTTTATTTTTCAAAAATTTTTATTAATTTTAATAAGTAGAGGTTACCATTTTGAGAATTATCTTCAAGAATTTTTTGTTAAACTTTTGAATTTAAAATATTTTGTACTTTTAATAATGTTTGTGTACTATAATTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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