Plant MITE

SE0530070

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3035
Capsella rubella
SE0530070
hAT
Hat11
scaffold_2:13537090-13537282
AGCACATC
CAGGGGCGGAGGCAATGACCAAGCATAAGGGTCAATTG

Secondary structure and sequence

TSD TIR

5'

3'

AGCACATC   G        --C   GA   AG            -T  ACCCT          CA  --A       ---AT      TTAAAATTATT
        CAG GGCGGAGG   AAT  CCA  CATAAGGGTCAA  TG     GATGAAATTT  AA   TTAGTTG     TTTGGC           
        ||| ||||||||   |||  |||  ||||||||||||  ||     ||||||||||  ||   |||||||     ||||||           A
        GTC CCGCCTCC   TTA  GGT  GTATTCCCAGTT  AC     TTATTTTAAA  TT   AGTCAAT     AAATCG           
CTACACGA   A        ATC   AA   AA            TT  ATTTT          TA  CCC       ATATT      TCCCCAGTCAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0530070

AGCACATCCAGGGGCGGAGGCAATGACCAAGCATAAGGGTCAATTGACCCTGATGAAATTTCAAAATTAGTTGATTTTGGCTTAAAATTATTAAACTGACCCCTGCTAAATTATATAACTGACCCTTATAAATTTTATTTTTTACATTTTGACCCTTATGAATGGAAATTCTACCTCCGCCACTGAGCACATC

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