Plant MITE

SE0530072

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3037
Capsella rubella
SE0530072
hAT
Hat3
scaffold_4:1705489-1705702
GTTCTGAT
TCTGATCAGGGGCGGAGGTAGGGTAGTGG

Secondary structure and sequence

TSD TIR

5'

3'

GT  -T      G       G     TAG   ----------    -         TGACCCTGGTGAATTTTTTAAATTTTATGTATTTTTAGGAAAAATATCAAATTGACC
  TC  GATCAG GGCGGAG TAGGG   TGG          TACG AGGGTCAAT                                                         
  ||  |||||| ||||||| |||||   |||          |||| |||||||||                                                         C
  AG  TTGGTC CCGCCTC ATCTT   GCC          AGTT TTGTTTAAT                                                         
 T  TC      A       G     TTA   TAGTACTCCC    T         ATTATTAATTAATACAATAATTTTTTTAAATATCCCCAGTTAACACAATATAATGTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0530072

GTTCTGATCAGGGGCGGAGGTAGGGTAGTGGTACGAGGGTCAATTGACCCTGGTGAATTTTTTAAATTTTATGTATTTTTAGGAAAAATATCAAATTGACCCTTGTAATATAACACAATTGACCCCTATAAATTTTTTTAATAACATAATTAATTATTATAATTTGTTTTTGACCCTCATGATCCGATTTTCTAGCTCCGCCACTGGTTCTGAT

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