SE0540074

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3039
  • Capsella rubella
  • SE0540074
  • CACTA
  • Ca1
  • scaffold_1:15238577-15238751
  • ATA
  • CACTAGTAAAAAAAATCTCTATAGCCACTTGGCTATTCGTG

Secondary structure and sequence

TSD    TIR
5'



3' 
ATA                CTC              TAT             TTAAAATTTGTGGCTATAGCGTCGTAACTTAAAAAA
   CACTAGTAAAAAAAAT   TATAGCCACTTGGC   TCGTGGTTGTGCC                                    
   ||||||||||||||||   ||||||||||||||   |||||||||||||                                     
   GTGATCATTTTTTTTA   ATATCGGTGAACCG   AGCGCTTTTAAGC                                    
ATA                TGT              -TC             ACCGATATTCCACTAAAAAATTTTTTGTCGGTGCTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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