SE0520079

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3044
  • Capsella rubella
  • SE0520079
  • Mutator
  • M2
  • scaffold_5:4303487-4303931
  • ATGTTTACA
  • TGTTTACAAGGGAAAACGGGGAAAATCAACCCAAACTATTCTCCGAAGGTATTTTGATACCCAAACTCGCGTACTCTGAATTTTACAACTCAAATCAACTTTTAATTCAAATAACCAACCTGAACCATATCAAATTTTGTCGATTTCAACCTCGA

Secondary structure and sequence

TSD    TIR
5'



3'
A   TT   A                               C              G     C   C      A                 C      A                           C      AA                     CGTTAACAAT                          A            T   A             TCCA
 TGT  ACA GGGAAAACGGGGAAAATCAACCCAAACTATT TCCGAAGGTATTTT ATACC AAA TCGCGT CTCTGAATTTTACAACT AAATCA CTTTTAATTCAAATAACCAACCTGAAC ATATCA  TTTTGTCGATTTCAACCTCGA          ATCCCTGCCCATCTTGAAGATTTGGA AATCAAGCTTAA CTT TGTAAAAACCAAG    
 |||  ||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||| |||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||  |||||||||||||||||||||          |||||||||||||||||||||||||| |||||||||||| ||| |||||||||||||    G
 ACA  TGT CCCTTTTGCCCCTTTTAGTTGGGTTTGATAA GGGCTTCCATAAAA TATGG TTT AGTGCA GAGACTTAAAATGTTGG TTTGGT GAAAGTTAAGTTTATTGGTTGGACTTG TGTAGT  AAAACAGCTAAAGTTGGAGTT          TAGGGACGGGTAGAACTTCTAAACCT TTAGTTCGAATT GAA ACATTTTTGGTTC    
A   TT   A                               A              G     A   A      G                 A      C                           A      AA                     ----------                          G            C   G             TCTT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End