SE0520080

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3045
  • Capsella rubella
  • SE0520080
  • Mutator
  • M3
  • scaffold_6:10409761-10410276
  • GTTTTGTTA
  • ATGGGAAAATTCCATAAAAATTCCCCATCTAATTTTAATTTGGAAGTTTAATACCCAATGTTATTTGGTTGGAAACAAAATGCATGGTTTATTAATTTGTTGTCTATTAATACATCAAGTATATAAAAATTGTCGAATCGAAGAAACCG

Secondary structure and sequence

TSD    TIR
5'



3' 
GTTTTGTT                                                                           C                   T  GTT              C                          G      CTTAACAAACGG                                 A          ACTAAACTTA   TTTATCGATCCCAATTCGATTTGGGATAATAGCAAAGAAC
        ATGGGAAAATTCCATAAAAATTCCCCATCTAATTTTAATTTGGAAGTTTAATACCCAATGTTATTTGGTTGGAAA AAAATGCATGGTTTATTAA TT   GTCTATTAATACAT AAGTATATAAAAATTGTCGAATCGAA AAACCG            TAATCGGATTGACGGAATCACTAAACCGAGGTT ATGGAATTAC          GGG                                        
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||   |||||||||||||| |||||||||||||||||||||||||| ||||||            ||||||||||||||||||||||||||||||||| ||||||||||          |||                                         
        TGCCCTTTTAAGGTATTTTTAAGGGGTAGATTAAAATTAAACCTTCAAATTATGGGTTACAATAAACTAACCTTT TTTTACGTACCAAATAATT AA   CAGATAATTATGTA TTCATATATTTTTAACAGCTTAGCTT TTTGGC            ATTAGCCTAACTGCCTTAGTGATTTGGCTCCAA TGCTTTAATG          GGG                                        
TATTGTTT                                                                           A                   T  AAC              A                          A      ----------AA                                 C          ------ATTA   ATTTGTGTGCCCATTAAACCCCAATAGGTTTCTGACGTAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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