SE0510081

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3046
  • Capsella rubella
  • SE0510081
  • Tc1/Mariner
  • St2
  • scaffold_4:3042476-3042728
  • TA
  • TACTCCCTCTGTTTCATTATAAGTGATGTTTAAGGTTTCGG

Secondary structure and sequence

TSD    TIR
5'



3' 
                               A  ------------       CACACTAAATAATAAAACATATAACTTATCCATTTCCCATAAAAACA    TAACTAATATGAATTCAACCAATAAGAAAATATGATGTAAAATAT
TACTCCCTCTGTTTCATTATAAGTGATGTTT AG            GTTTCGG                                               TCAT                                             
||||||||||||||||||||||||||||||| ||            |||||||                                               ||||                                             A
ATGAGGGAGACAAAGTAATATTCACTACAAA TC            CAAAGTC                                               AAGT                                             
                               A  GGTTAAAAAGAA       ----------------------------------ATATTCACTTCAA    TAAAGGATACGTTTTTAAATTACATAAATTATAAAAAACTGGTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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