SE0520083

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3048
  • Capsella rubella
  • SE0520083
  • Mutator
  • M6
  • scaffold_7:10752056-10752324
  • TTTTTCTTT
  • GGGTCATTCTCTAAAATACCATCATTTTTTTTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
 TTTTTCTTT   TCA     T                --      AGGA            -    C    ------------ACTAA   TTAAATTTCAAACTCTAAATTATAAATTCTAAACATTAAACCCTACCCCCT
          GGG   TTCTC AAAATACCATCATTTT  TTTTTT    CAAAAATACCAC AAGA TAAA                 AAT                                                   
          |||   ||||| ||||||||||||||||  ||||||    |||||||||||| |||| ||||                 |||                                                   A
          TCC   AGGAG TTTTATGGTAGTAAAA  AAAAGA    GTTTTTATGGTG TTTT GTTT                 TCT                                                   
TTTCTTTTTC   TTA     -                CC      -AAG            A    A    AATAACAAGTTACCATA   TAAAATTTAGAAACCAAACCCAACTAATAAACGTTAAATCCCATATCATAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3