SE0550084

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3049
  • Capsella rubella
  • SE0550084
  • PIF/harbinger
  • To10
  • scaffold_5:2906899-2907037
  • TTA
  • AGGGCATCCTCATTGGGGGTATCTTATGAGGCTAAGATACCCCCATTTTTCCAAAAAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TT   G                      TG               C      C    A   ATCCTTAT
  AGG CATCCTCATTGGGGGTATCTTA  AGGCTAAGATACCCC ATTTTT CAAA AAA        
  ||| ||||||||||||||||||||||  ||||||||||||||| |||||| |||| |||        A
  TCT GTAGGAGTAACCCCCATAGAAT  TCCGATTCTATGGGG TGAAAA GTTT TTT        
AT   G                      CG               A      A    C   GATACAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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