Plant MITE

SE0510088

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3053
Capsella rubella
SE0510088
Tc1/Mariner
St2
scaffold_4:3055425-3055677
TA
TACTCCCTCTGTTTCATTATAAGTGATGTTTTAG

Secondary structure and sequence

TSD TIR

5'

3'

                               T  CCAATTTT     TTT  GTA         ------------TT    A     TATGC      TTA  GGAT       -TT          TATATTTTACA
TACTCCCTCTGTTTCATTATAAGTGATGTTT AG        TTTTG   CA   TAAGTGATG              TTCA TTTCC     AAAAAT   AT    TTAATAT   TTTGACCAAT           
||||||||||||||||||||||||||||||| ||        |||||   ||   |||||||||              |||| |||||     ||||||   ||    |||||||   ||||||||||           T
ATGAGGGAGACAAAGTAATATTCACTACAAA TC        AAAAC   GT   ATTTATTAT              GGGT AAAGG     TTTTTG   TA    GATTATA   AAATTGGTTA           
                               T  -------C     --C  GTG         TTTGTATATTGAAT    A     ---TA      TAG  -ATT       CTT          TTCTTTTATAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0510088

TACTCCCTCTGTTTCATTATAAGTGATGTTTTAGCCAATTTTTTTTGTTTCAGTATAAGTGATGTTTTCAATTTCCTATGCAAAAATTTAATGGATTTAATATTTTTTGACCAATTATATTTTACATCATATTTTCTTATTGGTTAAATTCATATTAGTTAATGATGTTTTTATGGAAAATGGGTAAGTTATATGTTTTATTATTTAGTGTGCCAAAACCTTAAACATCACTTATAATGAAACAGAGGGAGTA

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