SE0550091

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3056
  • Capsella rubella
  • SE0550091
  • PIF/harbinger
  • To1
  • scaffold_7:12205192-12205615
  • TAA
  • AGGGGGGGTTATTGGGAGGATGATTTTAAAAGA

Secondary structure and sequence

TSD    TIR
5'



3'
TA                           A     GTTTATGGATTTCTAAAG       AT           -CAAAA   --            AAAATAATGTTTACC   A    TA    TTA     TTCTTCATATGATAGATTCTATAAATACTTGTGAGAATTGCAGTATTTTGAAAGTTGTTTTTAATGACTAAATATGTAAGGAATCATTAAACCAATAAC
  AGGGGGGGTTATTGGGAGGATGATTTT AAAGA                  TTTAGAG  TTTAAGATTCT      ATT  TTTGTGGATTCT               CAG TTTC  GAGT   ATAGA                                                                                                   
  ||||||||||||||||||||||||||| |||||                  |||||||  |||||||||||      |||  ||||||||||||               ||| ||||  ||||   |||||                                                                                                    
  TCCCCCTCAATAACCCTCTTACTAAAA TTTCT                  AAATCTC  AAATTCTAAGG      TAA  AAATATCTAAGA               TCT AAGG  TTAT   TTTAG                                                                                                   
AA                           A     ----------------AA       --           TAACAA   CC            --------------A   -    -A    ---     AGAACAATAACCACATACATAAAACATTAAGATAAATTTTAGGAAACAATAAGTTTTTCAACTCATAAATAACTAAAAGGTTAAGATAGTTTAAGATCA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End