SE0550093

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3058
  • Capsella rubella
  • SE0550093
  • PIF/harbinger
  • To7
  • scaffold_4:959648-959857
  • TAA
  • AGAGCACCTCCAATGG

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                --------        ATTGGAGAGTGCTAATCAATTTTTTAAAATTAAATTTTCAAAAATAGTGTTTATGTGTTGCTTATAATCACAACT
  AGAGCACCTCCAATGG        TAAGCACC                                                                           
  ||||||||||||||||        ||||||||                                                                            
  TCTCGTGGAGGTTACC        TTACATAG                                                                           
AA                TCTACGAA        AAATTGTGTAACAAATAGTAATATACATTACTAATATTAGTATTTTTTTCTTTTATAATATTCGTGGTATCAAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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