Plant MITE

SE0550096

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3061
Capsella rubella
SE0550096
PIF/harbinger
To4
scaffold_5:11403343-11403509
TAT
GGGTCCGAATGGTAACT

Secondary structure and sequence

TSD TIR

5'

3'

TAT  G              ---   G  -   A TGCGGGAGAAGTGCGGTGCGGTTCAAATAGTAGCGAAAATATATAGATATA
   GG TCCGAATGGTAACT   GCG TT TTC C                                                   
   || ||||||||||||||   ||| || ||| |                                                   T
   CC AGGCTTACCATTGG   GGC GT ATG T                                                   
TAT  G              TAT   -  G   - TTTGGCGTGGCGTTGTCACGACATTGTCACAGTTTTATAGATGTATATGTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0550096

TATGGGTCCGAATGGTAACTGCGGTTTTCACTGCGGGAGAAGTGCGGTGCGGTTCAAATAGTAGCGAAAATATATAGATATATATGTATATGTAGATATTTTGACACTGTTACAGCACTGTTGCGGTGCGGTTTTGTAGTGCGGTATGGTTACCATTCGGAGCCTAT

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