SE0550097

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3062
  • Capsella rubella
  • SE0550097
  • PIF/harbinger
  • To12
  • scaffold_2:11559975-11560112
  • TAA
  • AGACCAACATTATCAATGGGATCTTAGAGGCTAAGATCCCTCGGTTTTTGCAAAGGAAAGATCTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA  AC         CAA      C                                          AT
  AG  CAACATTAT   TGGGAT TTAGAGGCTAAGATCCCTCGGTTTTTGCAAAGGAAAGATCTT  
  ||  |||||||||   |||||| ||||||||||||||||||||||||||||||||||||||||||   
  TC  GTTGTAATA   ACCCTA AATCTCCGATTCTAGGGGGCCAAAAATGTTTCTTTTTTAGAA  
AA  CC         ACC      A                                          TA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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