SE0520101

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3066
  • Capsella rubella
  • SE0520101
  • Mutator
  • M1
  • scaffold_6:14147556-14148102
  • ATAAATTAA
  • AATTAAGGGGAAAAATGTCAGTCAAATCACGAACTTTCAAAATTTGGCCATTTAAATCACAAACTTTCTATATGGCCATTCAAAACTTGAACTTTTCGTTAACTTATTTTTAAAAACATCATCTTTCGTTGACCAGGCCGAAATGAACACCGTATCCTCAAATTCGTTGACAAAGCAGCTAACCATCGTTAATCATATTTGTTAGTGAGAAAAACGTCGTTTAATTCTAAAAC

Secondary structure and sequence

TSD    TIR
5'



3'
ATA    AAG             GTC      C           A                  A          A        C   A T    C    C  TA     -        AA                 C        A  A   C       TC     C    AC           -----------           -   A             -AAA           TT       ---------------------------------   ATCTCAAAATCG
   AATT   GGGAAAAATGTCA   AAATCA GAACTTTCAAA TTTGGCCATTTAAATCAC AACTTTCTAT TGGCCATT AAA C TGAA TTTT GT  ACTTA TTTTTAAA  CATCATCTTTCGTTGAC AGGCCGAA TG ACA CGTATCC  AAATT GTTG  AAAGCAGCTAA           CCATCGTTAAT CAT TTTGTTAGTGAGA    ACGTCGTTTAA  CTAAAAC                                 GAT            
   ||||   |||||||||||||   |||||| ||||||||||| |||||||||||||||||| |||||||||| |||||||| ||| | |||| |||| ||  ||||| ||||||||  ||||||||||||||||| |||||||| || ||| |||||||  ||||| ||||  |||||||||||           ||||||||||| ||| |||||||||||||    |||||||||||  |||||||                                 |||             
   TTAA   CCCTTTTTACAGT   TTTAGT CTTGAAAGTTT AAACCGGTAAATTTAGTG TTGAAAGATA ACCGGTAA TTT G ACTT AAAA CA  TGAAT AAAAATTT  GTAGTAGAAAGCAATTG TTCGGTTT AC TGT GTATAGG  TTTAA CAAT  TTTTGTTGATT           GGTAGTGATTA GTA AGATAATCATTCT    TGCAGCAAATT  GATTTTG                                 TAC            
GAA    ATA             AAA      A           A                  C          C        A   C T    A    A  CA     T        -G                 T        A  A   A       TT     A    -A           GTTTGTAAATC           A   G             CTGC           CC       TTTCACTCTTTCATCCCTAAACTAAAAACCTAA   TGCAATCTTAGT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End