Plant MITE

SE0520103

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3068
Capsella rubella
SE0520103
Mutator
M6
scaffold_7:10752056-10752324
AAAGAAAAA
GGAATTCCTCAAAATACCATCATTTTGGTTTT

Secondary structure and sequence

TSD TIR

5'

3'

AAAGAAAAAGA  -A    -  C                GG    CTTTC            TAAAATCAA    -  GTTCAATGGTATAGAATTTTAAATCTTTGGTTTGGGTTGATTATTTGCAATTTAGGGTATA
           GG  ATTC CT AAAATACCATCATTTT  TTTT     CAAAAATACCAC         ATTA TT                                                             
           ||  |||| || ||||||||||||||||  ||||     ||||||||||||         |||| ||                                                              
           CC  TAAG GA TTTTATGGTAGTAAAA  AAAA     GTTTTTATGGTG         TTTT AT                                                             
 AAAAAGAAAC  AG    A  -                AA    -TCCT            ---TTCTGA    G  TTTAAATTTAAAGTTTGAGATTTAATATTTAAGATTTGTAATTTGGGATGGGGGATTTATG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0520103

AAAGAAAAAGAGGAATTCCTCAAAATACCATCATTTTGGTTTTCTTTCCAAAAATACCACTAAAATCAAATTATTGTTCAATGGTATAGAATTTTAAATCTTTGGTTTGGGTTGATTATTTGCAATTTAGGGTATAGTATTTAGGGGGTAGGGTTTAATGTTTAGAATTTATAATTTAGAGTTTGAAATTTAAATTTTAGTTTTAGTCTTGTGGTATTTTTGTCCTAAAAAAAAAATGATGGTATTTTAGAGAATGACCCAAAGAAAAA

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