SE0550104

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3069
  • Capsella rubella
  • SE0550104
  • PIF/harbinger
  • To14
  • scaffold_3:11780968-11781221
  • TAA
  • AGACCATCTCCATTGAGGAGTGTTTAACAAAAGTTGTTTATTTTAGAGA

Secondary structure and sequence

TSD    TIR
5'



3'
TA   C        T G -  AG G       AAA T        TTA    GATAAA  T     ATAAAAAATGGT   AA       GA   CT     AAAATA  TTT      GC     - AA
  AGA CATCTCCA T A GG  T TTTAACA   G TGTTTATT   GAGA      AT TATTA            ATG  TTGCTTA  TAG  AAAAA      CA   AAAGTT  TTAAA C  
  ||| |||||||| | | ||  | |||||||   | ||||||||   ||||      || |||||            |||  |||||||  |||  |||||      ||   ||||||  ||||| |   
  TCT GTAGAGGT G T CC  A GAATTGT   C ACAAATAA   CTTT      TA ATAAT            TAC  AACGAAT  ATC  TTTTT      GT   TTTCAG  AATTT G  
AA   C        T G A  -A G       ACC C        TAA    AATATG  T     AATAAAATAAAC   CC       AA   AC     AACAAA  ---      AA     A AT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End