Plant MITE

SE0530105

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3070
Capsella rubella
SE0530105
hAT
Hat9
scaffold_5:3056814-3057026
CTTATGAA
TTATGAACAGGGGCGGACCCAGA

Secondary structure and sequence

TSD TIR

5'

3'

C      A              G AAAAAAAATTAAATGGATGCAAAAA    CACA    --  T  AACCCATGACCTCAAACACTACATGGGGGCACTGTAACCATTTTGACAC
 TTATGA CAGGGGCGGACCCA A                         GTAG    TGAG  GC TG                                                 
 |||||| |||||||||||||| |                         ||||    ||||  || ||                                                 T
 AGTATT GTCCCCGCCTGGGT T                         ACCC    CCGT  AC GT                                                 
A      C              G ---------------ATCTTCTTTC    ----    CA  -  GGTGGTTGGATAAATTTTGATTTTTTAAATGTAATTTTAATTTCAATAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0530105

CTTATGAACAGGGGCGGACCCAGAAAAAAAAATTAAATGGATGCAAAAAGTAGCACATGAGGCTTGAACCCATGACCTCAAACACTACATGGGGGCACTGTAACCATTTTGACACTTATAACTTTAATTTTAATGTAAATTTTTTAGTTTTAAATAGGTTGGTGGTGCAACTGCCCCCACTTTCTTCTATGTGGGTCCGCCCCTGCTTATGAA

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