SE0520111

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3076
  • Capsella rubella
  • SE0520111
  • Mutator
  • M10
  • scaffold_8:1624929-1625303
  • TGTTTATGA
  • GAGGGGAATTGTCTTAAATACCATAAAAATAGGGTTTTTTCCAAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TGTTTAT          G    -AA         AAA   GG            AAATAATTAT   -       TTCCAAAAATAACACTAAAATACATTTTTTTCAAAAATACCCCAAAACTAAAACTAGTTTTTTAACATTCAAAACTAATTTCTAATCCTAAACACTGAACCCTATCCATAAAAATATAC
       GAGGGGAATT TCTT   ATACCATAA   TAG  TTTTTTCCAAAA          AAG TTTTATT                                                                                                                       
       |||||||||| ||||   |||||||||   |||  ||||||||||||          ||| |||||||                                                                                                                       C
       TTCTCTTTAA AGAA   TATGGTATT   ATC  AAAAAAGGTTTT          TAT GTGAAAA                                                                                                                       
AGTATTT          -    ACC         AAA   -A            ----------   G       AAAAAAACCTTTTCATGGTGTTTTAAAATTAAAAAGGTTTTTATCGTATTTGTATTTTTAAACTATAAACTTTCACATCTTAAAAAAAAAAATACAAACCCAACTGATGAATATAAACC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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