SE0550112

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3077
  • Capsella rubella
  • SE0550112
  • PIF/harbinger
  • To3
  • scaffold_5:2170855-2171217
  • TAA
  • AGGGGGGTGTATTCAAAGTGAAATTTCAAG

Secondary structure and sequence

TSD    TIR
5'



3' 
TA             CA      A    C   -----TT         AAGTTTACAAATTCTGTGTTATTCAATCATGGATTTTTAAAAGTCTTATGAAATCCACTATTATTTAACTAATTATTTTAAAATCCACCTTAAAATCCGCTGTTATTGAAAACAGTTTGTGGATTTGATTTTAAAT
  AGGGGGGTGTATT  AAGTGA ATTT AAG       ATTTGTAAA                                                                                                                                        
  |||||||||||||  |||||| |||| |||       |||||||||                                                                                                                                         
  TCCCCCCACATAA  TTCATT TAAA TTC       TCAAAATAA                                                                                                                                        
AA             CC      G    A   TCTAAAC         CTCTAAAACTACTAAAATCCCTTGAAGTATATTAAATACATTTTAAGAAAGTTTAGGGTGTATTTTGAAACTCTAAAACTAAGAACATAAAAATTAATTTCTTCAAAGTACTTTAGGAGACTTTAGGAAACTTTAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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