SE0550113

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3078
  • Capsella rubella
  • SE0550113
  • PIF/harbinger
  • To8
  • scaffold_5:8725399-8725537
  • TAA
  • AGACCATCCTCAATGCAAAGGATCTTAAGGGGGTTTTTACCCTAAGATTTGCAAAGAGGGTAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA  AC                       A                                   ATTAT
  AG  CATCCTCAATGCAAAGGATCTTA GGGGGTTTTTACCCTAAGATTTGCAAAGAGGGTAT     
  ||  ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||      
  TC  GTAGGAGTTACGTTTCCTAGAAT CTCCCAAAAGTGGGATTCTAAACGTTTCTCCCATG     
AA  CC                       -                                   GAATA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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