Plant MITE

SE0530114

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3079
Capsella rubella
SE0530114
hAT
Hat12
scaffold_7:10338379-10339076
GTTATGGG
TTATGGGTAGCCCTGGGCA

Secondary structure and sequence

TSD TIR

5'

3'

G      G            --------------    G -   --   TCG   AATTTGTGATATTTGTGATTTGCTTCGCTTCGACCGAATAGTTGATTTTGCTATTTGCTTCGCTTCGTAAATTTTCGAGTATTCGGAACTTCGAATATTCGAATATTTTTCGTAATATTTGCGAATTACTTGCTTCGTTTCGCTTCGACCCATTTTTTTTTTTTAAACTAAAAACATATAGTACACAAATATAAAGTGCAAAATATGAGATATTAGAGGTTCTTGTTTGACATGTTTTTAAAATAAGAAGAAAATGTAACCACCGTCCATAGAATTCTCACATTTTATTTTTAATATTGATTTT
 TTATGG TAGCCCTGGGCA              CGAA C GAA  TAT   GAA                                                                                                                                                                                                                                                                                                                
 |||||| ||||||||||||              |||| | |||  |||   |||                                                                                                                                                                                                                                                                                                                T
 GGTATT ATCGGGACTCGT              AAGC T AGC  AGC   TTT                                                                                                                                                                                                                                                                                                                
G      G            TTTATAAGCAATCT    - A   AA   ---   AAGCAAAGCTAAGCTAAGCTTTTTAAGTTTATAGATATTCTATAACTTGGCTTGGTTTATACTTTTACATCATAAACATTTTTGGCTTCGTTTATTGTTTATAACTAAAAGAATCACGGCTTATAGGCGAAGCGAAGCATATAAATATATATACATAATTATATTTAGTAAAATATTATATATATATTATACACATAAATATCTAAACTCATATATAGAATATCCGAATAATAAGTTTAATAATATAAAACCAGGCAACCAAAAAAACGATTTACAACAAGAATTCGTTTATTTTGAAATAATC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0530114

GTTATGGGTAGCCCTGGGCACGAAGCGAATATTCGGAAAATTTGTGATATTTGTGATTTGCTTCGCTTCGACCGAATAGTTGATTTTGCTATTTGCTTCGCTTCGTAAATTTTCGAGTATTCGGAACTTCGAATATTCGAATATTTTTCGTAATATTTGCGAATTACTTGCTTCGTTTCGCTTCGACCCATTTTTTTTTTTTAAACTAAAAACATATAGTACACAAATATAAAGTGCAAAATATGAGATATTAGAGGTTCTTGTTTGACATGTTTTTAAAATAAGAAGAAAATGTAACCACCGTCCATAGAATTCTCACATTTTATTTTTAATATTGATTTTTCTAATAAAGTTTTATTTGCTTAAGAACAACATTTAGCAAAAAAACCAACGGACCAAAATATAATAATTTGAATAATAAGCCTATAAGATATATACTCAAATCTATAAATACACATATTATATATATATTATAAAATGATTTATATTAATACATATATATAAATATACGAAGCGAAGCGGATATTCGGCACTAAGAAAATCAATATTTGTTATTTGCTTCGGTTTTTACAAATACTACATTTTCATATTTGGTTCGGTTCAATATCTTATAGATATTTGAATTTTTCGAATCGAATCGAAACGAATTTCGAAACGAATCGAATCTAACGAATATTTTGCTCAGGGCTAGTTATGGG

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