SE0550118

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3083
  • Capsella rubella
  • SE0550118
  • PIF/harbinger
  • To18
  • scaffold_8:12414247-12414386
  • TAA
  • AGACCAACATTATTGCAAGACTCTTAAACCCCAAAATGGGTATCTTGCAACAGTGTTTTGTATCTA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA   C                CTC                                           AT
  AGA CAACATTATTGCAAGA   TTAAACCCCAAAATGGGTATCTTGCAACAGTGTTTTGTATCTA  
  ||| ||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||   
  TCT GTTGTAATAACGTTCT   AATTTGGGGTTTTACCCATAGAACGTTGTCACAAAACATAGAT  
AA   C                TAA                                           TA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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