Plant MITE

SE0550119

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3084
Capsella rubella
SE0550119
PIF/harbinger
To35
scaffold_227:2171-2493
ACA
GGGTTTGAATGGAGAA

Secondary structure and sequence

TSD TIR

5'

3'

ACA  G         A     AGATATAAAGCAGTAATATAGCAGGACAGATTAACTGTTTTTTGTTTACCATTCATAAAAATAAATAATTATCATTTATAACTGCAGTTTTCCTGTTAAAATTCTGTAGGTGGACAAAAAAAAAGAAAATTTATTTTATGG
   GG TTTGAATGG GAAGC                                                                                                                                             
   || ||||||||| |||||                                                                                                                                              
   CC AAGCTTACC CTTTT                                                                                                                                             
ACA  G         -     ATTTTATCCGTCTCGTCTAGTTCACATGTTCCGTCTAGATTGTTTTATTTTCGTCTAGTTCGTCTAAACCGTCAAGTTCACGTCTAGGATGTAATTTTATCTCCACAAATTAGACGAGACGAAATATCCCTTTTTTGTACT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0550119

ACAGGGTTTGAATGGAGAAGCAGATATAAAGCAGTAATATAGCAGGACAGATTAACTGTTTTTTGTTTACCATTCATAAAAATAAATAATTATCATTTATAACTGCAGTTTTCCTGTTAAAATTCTGTAGGTGGACAAAAAAAAAGAAAATTTATTTTATGGTCATGTTTTTTCCCTATAAAGCAGAGCAGATTAAACACCTCTATTTTAATGTAGGATCTGCACTTGAACTGCCAAATCTGCTTGATCTGCTTTTATTTTGTTAGATCTGCCTTGTACACTTGATCTGCTCTGCCTATTTTATTTTCCCATTCGAAGCCACA

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