Plant MITE

SE0530121

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3086
Capsella rubella
SE0530121
hAT
Hat3
scaffold_3:12020055-12020268
AGTCCTTG
CAGGGGCGGAGGTATATAAGG

Secondary structure and sequence

TSD TIR

5'

3'

AGTCCTTG   G       G  -----------       -ACC         - T  GGCCCTGTTGAATTTTTCAAATTAGATGAATTTTTAGGAAAAATATCAAACTGACC
        CAG GGCGGAG TA           TATAAGG    ATAGGGGTC A TT                                                        
        ||| ||||||| ||           |||||||    ||||||||| | ||                                                         
        GTC CCGCCTC AT           ATATTCC    TTAAAAAAA A TT                                                        
GTTCCTGA   A       G  CGTTTAGTCAA       CAGT         T -  TCCAATTAATACAATAATTTTTTTTTAATATCCCCAGTTAACACAATAAAATGTTC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0530121

AGTCCTTGCAGGGGCGGAGGTATATAAGGACCATAGGGGTCATTTGGCCCTGTTGAATTTTTCAAATTAGATGAATTTTTAGGAAAAATATCAAACTGACCCTTGTAAAATAACACAATTGACCCCTATAATTTTTTTTTAATAACATAATTAACCTTTATAAAAAAATTTGACCCTTATAAACTGATTTGCTAGCTCCGCCACTGAGTCCTTG

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