SE0520122

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3087
  • Capsella rubella
  • SE0520122
  • Mutator
  • M9
  • scaffold_5:5816918-5817492
  • TGAGAAAGG
  • GGGGAAAAGTAGCGAAAATCAACCCACACTATTTGATGGCGGTATATTTATATCCAAACTACGATACTTGGCAAATAGCAACCTAAACTCACA

Secondary structure and sequence

TSD    TIR
5'



3'
 TGAGAAA  G                       C                  A       C    C                                  AAATT         C    A    C              C        A     C   C   G             C     A                  C ATA        A      C         AAAAAC  A                                   -TTCGAT    TT
        GG GAAAAGTAGCGAAAATCAACCCA ACTATTTGATGGCGGTAT TTTATAT CAAA TACGATACTTGGCAAATAGCAACCTAAACTCACA     TTCAAATTC CAAC TAAA TATATGAAATCAGC AAAGTCAA ATATA CGA ACG TGTTAGTTAACCA TTAAC GCGATGAGTCAGTCGACA C   GCAGTGAC GGACAT GGAGTTGAG      GA GTCGTTTTGTGAGTTTAGGGTTCTCGAATTGAAGA       GAGT  
        || ||||||||||||||||||||||| |||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||     ||||||||| |||| |||| |||||||||||||| |||||||| ||||| ||| ||| ||||||||||||| ||||| |||||||||||||||||| |   |||||||| |||||| |||||||||      || |||||||||||||||||||||||||||||||||||       ||||   
        TC CTTTTTATCGTTTTTAGTTGGGT TGATAAACTACCGCCATA AAATATG GTTT ATGCTATGGGCCGTTTATCGTTGGATTTGAGTGT     AAGTTTAAG GTTG ATTT ATATACTTTAGTCG TTTTAGTT TATAT GCT TGC ACAATCAATTGGT AATTG CGCTACTTAGTCGGTTGT G   CGTTACTG CTTGTA TCTCAACTC      CT CAGCAAAGCACTCAAATCCCGGGAGCTTAGTTTCT       TTCG  
GGGAAGAG  G                       C                  A       A    A                                  -ATTT         A    G    A              C        A     A   T   A             A     C                  A CAC        C      A         ATTATA  G                                   TGACGAT    TT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End