SE4530001

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3089
  • Cannabis sativa
  • SE4530001
  • hAT
  • Hat1
  • scaffold24221:12132-12809
  • GTAACTAG
  • TAGTAGGGGTGGGCATC

Secondary structure and sequence

TSD    TIR
5'



3' 
GTAAC  G              -C   C        CC   TT  CTTCAT     -                      TTGAAAAATCATCAT     ----    TCCAATTAGACCTCAAAATCCAATCCAATCCGATCCAATCCAATTACTAATTGGATTGGATCGGTTTTATCCAATTACACACTTAAATTTCAATATTAGCTTAAAAATATAAAGAAAAATACTTAACAAAATAAGTATCACTTTTTATTAAAGTTTAATACTTCATAAATATACTATTCTTACAAGTGTATTGTAGCTAAAAGTTTTAAAATAATTAAGACAACAACATTTCTAAGTAATAAAATAGA
     TA TAGGGGTGGGCATC  GAT CAATCCAA  TTT  TT      CCGAT CCAATCCAATTAGTAATTGGAT               CCGAT    CCAA                                                                                                                                                                                                                                                        
     || ||||||||||||||  ||| ||||||||  |||  ||      ||||| ||||||||||||||||||||||               |||||    ||||                                                                                                                                                                                                                                                         
     AT ATCCCCACCCGTAG  GGT TAGGTTAG  GTT  AA      CTTGG TTGGCTAGGTTAGGTTAGGTTA               ATGTT    AACC                                                                                                                                                                                                                                                        
GATCA  G              TA   -        --   --  ------     C                      ---------------     TTTC    TATAGGTTAATGTTAACCTAACCTAACCTACGATTTTCAATCTAAGATTAACCTAACCTAGCCAATAACCTACAGTTAGAGTTTTAGATTAATTTTTGGCTAGGTTAGGTTAATGTAAATATAGATAATTTTTCAATAAATATATTATTTTGTATAACTTTTTACATTATTTATAAATAATCTAAAAAAAACATACAACTTAAACATTGTGAACTAACAAATCACATAAATAAAAGTACTATAAAACA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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