SE4520005

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3093
  • Cannabis sativa
  • SE4520005
  • Mutator
  • M4
  • scaffold8942:14960-15375
  • AAAAATAAA
  • GGCTAATTAGGATTTTTGCCC

Secondary structure and sequence

TSD    TIR
5'



3' 
AAAAATAAA                  -   CCAAAA     C      C     T                  T -                                                      C       --GTAAGGAAA     ACATGGATGAAAGTTCAAGGGGCATGATTTGGCACATGTCAAAGTACGAGGAGCG
         GGCTAATTAGGATTTTTG CCC      TTTGA ATGTAC AAATC TGTCCCTTGAACTTTTCT G TCGTTAAAAATTTTCCCTGAACTATTGAGATTATTGGATTTAAGGACTTTTGTC AATTTTA           GTCTA                                                       
         |||||||||||||||||| |||      ||||| |||||| ||||| |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||           |||||                                                       T
         CCGATTAATCCTAAAAAC GGG      AAACT TATATG TTTAG ACGGGGGATTTGAAAAGA C GGTAATTTTTAAGAGGGACTTGATAACTCTAATAGTTTAAATTCCTGAAAACAG TTAAAGT           ATTAA                                                       
AAATAAAAA                  A   TATTAG     A      T     T                  - T                                                      A       AAGTTAAAATG     ATCACAAACAAATACATGATTTAGTACGAGGAATCTGAAATTGTAGATGGTTTAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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