Plant MITE

SE4530007

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3095
Cannabis sativa
SE4530007
hAT
Hat2
scaffold19641:4300-4586
CCAGTAGT
GTCAGTGGCGGACCCAGA

Secondary structure and sequence

TSD TIR

5'

3'

CCAGTA T  GT          G ATTTAA           GC  AAATAAA   -           -----AT        --------------     T ----    TTGAACCTTTACCCTCTAACCTATTTACCAACTACCTTAACCATTA
      G CA  GGCGGACCCA A      AGTGAGGGGGG  GT       TTT AAAAAGAAAAT       AAAGTGTA              GTTAG G    GGGT                                              
      | ||  |||||||||| |      |||||||||||  ||       ||| |||||||||||       ||||||||              ||||| |    ||||                                               
      C GT  CCGCCTGGGT T      TCGCTCCCCCC  CA       GGA TTTTTTTTTTA       TTTTACAT              TCAAT G    ATAT                                              
TGATGA C  AT          G --AACA           GT  GCGGGGG   C           GCTCTTT        ATACATAAAATTAA     - TTGT    AAACATAATTTTCTACTATAAATATCTGTATTATCATTGGAACCAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE4530007

CCAGTAGTCAGTGGCGGACCCAGAATTTAAAGTGAGGGGGGGCGTAAATAAATTTAAAAAGAAAATATAAAGTGTAGTTAGTGGGGTTTGAACCTTTACCCTCTAACCTATTTACCAACTACCTTAACCATTACACCAAGGTTACTATTATGTCTATAAATATCATCTTTTAATACAAATATATGTTGTAACTAATTAAAATACATATACATTTTTTTCTCGATTTTTTTTTTCAGGGGGGGCGACTGCCCCCCTCGCTACAATGTGGGTCCGCCTATGCCAGTAGT

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