Plant MITE

SE4530010

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3098
Cannabis sativa
SE4530010
hAT
Hat4
scaffold131299:156-425
CTAGCAAC
CTAGCA

Secondary structure and sequence

TSD TIR

5'

3'

          ACCA           ---------A   A     -    TAGGCCCGTGCCTAGGGCCCACACTTTTCGGGGGCCCAAAATAAAAAAATTAAAAAAAATTATTAGGCTTTTATTTAAGTAAAATTAAGTGTATT
    CTAGCA    GGGCCGGCCCT          GGC TAGGC GGGC                                                                                               
    ||||||    |||||||||||          ||| ||||| ||||                                                                                               A
    GATCGT    CCCGGCCGGGA          CCC GGGTT TGTT                                                                                               
CAAC      ----           CTTTTATATA   -     C    TTATTTAAAACCCCTCACAATACCCTAAACTTGGGTACTGGAATTTATAATACCGAAGGTGGAGTTGGTTGATTCGATACTTATAAACAACAAAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE4530010

CTAGCAACCAGGGCCGGCCCTAGGCATAGGCGGGCTAGGCCCGTGCCTAGGGCCCACACTTTTCGGGGGCCCAAAATAAAAAAATTAAAAAAAATTATTAGGCTTTTATTTAAGTAAAATTAAGTGTATTATAAACAACAAATATTCATAGCTTAGTTGGTTGAGGTGGAAGCCATAATATTTAAGGTCATGGGTTCAAATCCCATAACACTCCCCAAAATTTATTTTGTCTTGGGCCCATATATTTTCAGGGCCGGCCCTGCTAGCAAC

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