SE4540011

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3099
  • Cannabis sativa
  • SE4540011
  • CACTA
  • Ca1
  • scaffold3985:36652-36989
  • ATA
  • CACTACAAAAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
ATA            CAGCTACTT                    --    CATA        ------------  AACTAAA  -     TTTGGTCACAACAAAAAATTACTTGTGACTAAAACATAATATTTAGATACAAGTTGTCACTAATTTACTTTTAGTCACAATAAGTATTGTGACT
   CACTACAAAAAA         TTAGTGACAACTTTTTAGTC  ACAA    AATTTTTT            GT       TG TGACT                                                                                              
   ||||||||||||         ||||||||||||||||||||  ||||    ||||||||            ||       || |||||                                                                                              A
   GTGATGTTTTTT         AATGAAAATCAGTGTTGTTT  AACA    CTGATTTT            AC       TG TTGAT                                                                                              
ATA            -------AG                    TG    ----        CATGTTTTAAAC  -------  A     TAATAATTAATAGTAAGGATACAACACTGATTTTCCAGACACCGATTTCCATAATCAGTGTTTTTAATGTTAAACAACACTGATTTATACCAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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