SE4520017

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3105
  • Cannabis sativa
  • SE4520017
  • Mutator
  • M1
  • scaffold11477:39420-39811
  • TTTTTATAT
  • GGGTAAATACCATTTTGGACCCTGTGTTTTGCAAAAGTTACAGATTGGACCCTGTGTTTTGTTAAATGACAAAATGGACCCTGTATTTTCTAAAATAGTAAAAATAGGACCCTGAGTTTAATTTTTGACAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TTTTTATAT                     C G                 A         C                                                A                   A      A   CTTTTTTT      --ACAA  AAC     --------     T   TAA   GAATAGAT
         GGGTAAATACCATTTTGGACC T TGTTTTGCAAAAGTTAC GATTGGACC TGTGTTTTGTTAAATGACAAAATGGACCCTGTATTTTCTAAAATAGTA AAATAGGACCCTGAGTTTA TTTTTG CAA        TTTAAT      CC   TTGAA        GACAA GCT   TAC        
         ||||||||||||||||||||| | ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||        ||||||      ||   |||||        ||||| |||   |||        A
         CCCATTTATGGTAAAACCTGG A ACAAAATGTTTTCAATG TTAACCTGG ATACAAAACAATTTACTGTTTTACCTGGGACATAAAAGATTTTATCAT TTTATTCTGGGACTTAAAT AAAAAC GTT        AAATTA      GG   GATTT        CTGTT TGA   ATG        
TATATTTTT                     A G                 G         A                                                G                   A      A   -TTATTTC      ATATTA  CTA     TCACAATA     T   CAA   TAAAAAAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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