Plant MITE

SE4550018

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3106
Cannabis sativa
SE4550018
PIF/harbinger
To2
scaffold36061:14022-14419
TTA
TAGAGCATCTCCAATGGTAGCATTCTTTGAAGATGCT

Secondary structure and sequence

TSD TIR

5'

3'

T                    C   CT   A   -    -CTATATCTCCACATCATCC      TAATATTTTATTTTATTTTTCTTCCATATCATTTTTGGCACCTTTACTTTTAAAAACACTCCAATGGTATAATACTTTTTTAAAATGCTATAATTATGATATCACACATTATTATATATATAATTTTTTTTCTTTA
 TAGAGCATCTCCAATGGTAG ATT  TTG AGA TGCT                    AAAATA                                                                                                                                        
 |||||||||||||||||||| |||  ||| ||| ||||                    ||||||                                                                                                                                         
 ATCTCGTAGAGGTTACCATT TAA  AAC TCT ACGA                    CACCGT                                                                                                                                        
A                    A   --   C   T    ACTACTCCACCTTTCGAATA      TTTATATCCCTACAATATGATAACCTCTATTTTCTTACGATAAGAATTTTAAACGTAACTACGGTGCGTTATTGTAACTACGATATAAAAAAAATATGTTATTTTTTAATTTTCACGTTATATATATTATCAAATT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE4550018

TTAGAGCATCTCCAATGGTAGCATTCTTTGAAGATGCTCTATATCTCCACATCATCCAAAATATAATATTTTATTTTATTTTTCTTCCATATCATTTTTGGCACCTTTACTTTTAAAAACACTCCAATGGTATAATACTTTTTTAAAATGCTATAATTATGATATCACACATTATTATATATATAATTTTTTTTCTTTATTAAACTATTATATATATTGCACTTTTAATTTTTTATTGTATAAAAAAAATATAGCATCAATGTTATTGCGTGGCATCAATGCAAATTTTAAGAATAGCATTCTTTTATCTCCAATAGTATAACATCCCTATATTTTGCCACATAAGCTTTCCACCTCATCAAGCATTCTCCAAAATATTACCATTGGAGATGCTCTAA

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