SE4520022

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3110
  • Cannabis sativa
  • SE4520022
  • Mutator
  • M11
  • scaffold19767:6880-7443
  • ATCATAAAA
  • GGGTAAATTGCGGCATAAATACCTAATGTTTTTTATTTTATACACTTAAATACCGAATGTTTATTTTTGGTGGCAAAAATACCTAATGTTACAATTCTCTTACACCGTTTCTACCACTTCCGTTATTAATTCATAAATATAGACACGTGGAGGGCCCAAATGCATTACATTTATTTATTTTATTTTAAAATTTAATATTCTCAATATCAAAAACTAAATTAC

Secondary structure and sequence

TSD    TIR
5'



3'
ATCATAAAA                    A C         TT                    G               T                                  C   T               TTA            A             CC           C       --                          CAA   CAA         --      A   GAGTGAACCAATGTAGTACATGGAACATGATTATCGAAATGAAG
         GGGTAAATTGCGGCATAAAT C TAATGTTTT  ATTTTATACACTTAAATACC AATGTTTATTTTTGG GGCAAAAATACCTAATGTTACAATTCTCTTACAC GTT CTACCACTTCCGTTA   ATTCATAAATAT GACACGTGGAGGG  CAAATGCATTA ATTTATT  TATTTTATTTTAAAATTTAATATTCT   TAT   AAACTAAAT  TACCAT GGT                                            
         |||||||||||||||||||| | |||||||||  |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||||||   |||||||||||| |||||||||||||  ||||||||||| |||||||  ||||||||||||||||||||||||||   |||   |||||||||  |||||| |||                                             
         CCCATTTAACGCCGTATTTA G ATTACAAAG  TAAAATATGTGAATTTATGG TTACAAATAAAAACC CCGTTTTTATGGATTACAATGTTAAGAGAATGTG CAA GATGGTGAAGGCAAT   TGAGTATTTATA CTGTGCACCTCCC  GTTTACGTAAT TAAATAA  ATAAAATAAAATTTTGAATTATAAGA   ATA   TTTGATTTA  ATGAAC AAA                                            
AAAATACTA                    C A         TC                    A               T                                  A   T               ---            C             AA           A       AA                          TTC   ATC         CG      -   TTTTTTTTTGAACAAGAGTATTGTTAAAAATGTACTATAACCGT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End