SE4530024

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3112
  • Cannabis sativa
  • SE4530024
  • hAT
  • Hat6
  • scaffold17174:388-862
  • CATCAAAC
  • TAGGGGTGGCAA

Secondary structure and sequence

TSD    TIR
5'



3' 
CATCAAAC     G      TT    -     - -   --       - T    TATCGAGACC     ATAACAGGTACATGCTCGACCCGAACACGACCCGTTTAATAATCGTGTCAAAAAAATGAAACCCGAACACGATCCGTTTATAAACGGGTTGACACGACACGACTCGTGTAACCCGTTTATAAGTATATTTTGTTTAAACATGTCAATCAATAACACGTTTATGAAGTATTCAACACGT
        TAGGG TGGCAA  CGTG TTCGC G GGT  CGTGTTC G GTCG          CATGT                                                                                                                                                                                  
        ||||| ||||||  |||| ||||| | |||  ||||||| | ||||          |||||                                                                                                                                                                                   
        ATCCC GCCGTT  TTGC CAGTT G GCT  TGTGCTG G CTTT          GGGCG                                                                                                                                                                                  
CAAACTAC     G      --    C     T T   AC       A -    ----------     TGCTCTCAATCGCCCAAACCCAAACGGAATTTAACCAAGCCCAGCACAAGCCCAACTGAGCAGATTGGGTAAATTATTTGCCCAGCACAAGCCCAACTGTGCCGATTGTGCTTTAACTGGGCAATTACTGGATAAATTTCAATAAAATCATCAAATTACACAGTATTTACCGAATGTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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