SE4530025

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3113
  • Cannabis sativa
  • SE4530025
  • hAT
  • Hat7
  • scaffold156595:343-885
  • TTTTGAAC
  • TTTGAACTAGGGGTGTTC

Secondary structure and sequence

TSD    TIR
5'



3'
T      C           ATC      CTC  ---      --    CTAC CCGCACCGCATAAAAAATGCGGTTTGAAATTTTTTACGGTGCGGTCGCGGTTTGAATTTTTCCTAAACCGCGCGGTACGGTGCGGTTTGCGGTTTTGAAGTGTTCATATGCGGTTTAAACCGCACCGCACATTATAAAAATACTAATTTTTATATTTATTTAGGTCCAATAATATGTGAATCTCCAACTCAAAGCCCACTAATTATTATATTGTTGAAACTTAAT
 TTTGAA TAGGGGTGTTC   AAACTG   AA   ATTGTC  CGCA    A                                                                                                                                                                                                                                 
 |||||| |||||||||||   ||||||   ||   ||||||  ||||    |                                                                                                                                                                                                                                 T
 AAGTTT ATCCCCACAAG   GCCACG   CC   CACGCC  AAAC    T                                                                                                                                                                                                                                 
C      T           --C      ---  CAC      AA    ---- GATAAAAAAGTTTGGTTGGGCGTGCACGCCAAAAAAAGTTAAAGGGTTTGGCGTGGGCGTGGCACTTTGATTTTTTAGCGTGGCGTTTTTTATCACGCCATGCCACGCCAAAAACGCCAAAGACGCCAAACCTGATAGTGGTATATTAATTTGATAGTGTTTATGGTGTTTCAAACTCGTTGTGAATAGTTTTTATGGTATTCCGAAATTTTATTTTTATTTTTT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End