SE4520033

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3121
  • Cannabis sativa
  • SE4520033
  • Mutator
  • M14
  • scaffold13381:3169-3555
  • TTAACATTA
  • AGGGTAAATACTATTTTGAATCTTATGTTTTGTAAAAGTTACTGATTG

Secondary structure and sequence

TSD    TIR
5'



3'
TTAACATT          C       A  CT A                C      AACTCTC             AAT    C   C C         -C    A             C     TATAATC       ATTAAAA       A     T        A  --   ATA  -AA  C   T    TTG
        AGGGTAAATA TATTTTG AT  T TGTTTTGTAAAAGTTA TGATTG       TGTTTTGTTGAAT   AATT AGA C TGTATTTTT  AAAT GTACAAAATAGAC CTGAG       TTGTCAA       TTTAATA TAACC GACTTGAA GT  GTT   AC   GA TAG TACA   
        |||||||||| ||||||| ||  | |||||||||||||||| ||||||       |||||||||||||   |||| ||| | |||||||||  |||| ||||||||||||| |||||       |||||||       ||||||| ||||| |||||||| ||  |||   ||   || ||| ||||    
        TCCCATTTAT GTAAAAC TG  A ATAAAACATTTTCAAT ATTAAT       ATAAAACAATTTA   TTAA TCT G ACATAAAAA  TTTA CATGTTTTATCTG GATTT       AGCAGTT       AGATTAT ATTGG TTGAACTT CG  CAA   TG   CT ATC ATGT   
ATTTTAAT          A       C  AT C                A      CAAAAAA             CTC    A   T A         AA    C             A     --TTAAA       AAACAAA       -     -        -  GT   AGG  GTG  T   T    TTT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End