SE4520036

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3124
  • Cannabis sativa
  • SE4520036
  • Mutator
  • M9
  • scaffold67848:5897-6287
  • TTAAATATA
  • AGAGTAATTTGCGGCATAAATACCTAAGTTTAACTCTCAGTTGTAAATAAATACCTAAGTTTAGTTTTTGGCGGTAATAATACCTAAGTTATAATTCTGGAACTTTTGTAGGTACCTGACTGTTAATTATTAAGTAAATTGCCACGTGGCA

Secondary structure and sequence

TSD    TIR
5'



3'
TTAAATAT           C           C                                                  T                  A  C         T                   -T     A  AA    -       G  ACTC  A      -CCAAGTC     A     A  TT
        AGAGTAATTTG GGCATAAATAC TAAGTTTAACTCTCAGTTGTAAATAAATACCTAAGTTTAGTTTTTGGCGG AATAATACCTAAGTTATA TT TGGAACTTT GTAGGTACCTGACTGTTAA  TATTA GT  ATTG CCACGTG CA    CT ATTGGT        ATTAA TTTTT TT  
        ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || ||||||||| |||||||||||||||||||  ||||| ||  |||| ||||||| ||    || ||||||        ||||| ||||| ||   
        TCTCATTAAAC CCGTATTTATG ATTCAAATTGAGGGTCAACATTTATTTATGGATTCAAATTAAAAACCGCC TTATTATGGATTCAATAT AA ATCTTGAGA CATCCATGGATTGGCAATT  ATAAT CA  TAAT GGTGCAC GT    GA TAACCA        TAATT AAAAA AG  
ATATAAAT           T           A                                                  T                  A  A         -                   TT     A  -G    A       A  AAAA  A      TATAAAAT     A     A  TT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End