SE4540037

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3125
  • Cannabis sativa
  • SE4540037
  • CACTA
  • Ca2
  • scaffold14437:6643-6986
  • TAA
  • ACACTACAAGAAATGTC

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                 -            A  GTTCGCTACTGCGCTGGTAAAAGTAACTTTTACCAGCACATTTCGCAAACTGCGCTGGGAAAGAGGTCAAAGTTTTACCAGCGTACATTTGCAGTGGCTCAAATCTAACTTTTACCAGCGCATTTACACGCTGGTAAA
  ACACTACAAGAAATGTC ACTTTTACCAGC CA                                                                                                                                          
  ||||||||||||||||| |||||||||||| ||                                                                                                                                           
  TGTGATGTTCTTTACAG GAAAACGGTCGT GT                                                                                                                                          
AA                 G            -  AAAAACACGACCGTTTTCAACCATAATGCGACCATTTATTTTAAATGAACACTACACAACCGTTTTCCCCCAACCGTTTAGTTGCAACCATAATCTTGAAAACGGTCTTATTTTATTTTTCGCGACCGTTTTTACTGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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