SE4520040

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3128
  • Cannabis sativa
  • SE4520040
  • Mutator
  • M15
  • scaffold7860:12399-12859
  • TTATATTAA
  • TAAGAGTAATTTGCGGTAAAATCTTCTTAATTGTCAATTTATTTGCAAAAAATCATCCAATCTCATATTTTGGTGGGAAAACTCTCCAAAGTACTGTTCTGTTTACA

Secondary structure and sequence

TSD    TIR
5'



3'
TTATAT                          TT                 C                    A                   C                    TTTTTAA A          C  T            C                     TAC  A               CTTAC     C                    TGC    AATTAC
      TAAGAGTAATTTGCGGTAAAATCTTC  AATTGTCAATTTATTTG AAAAAATCATCCAATCTCAT TTTTGGTGGGAAAACTCTC AAAGTACTGTTCTGTTTACA       G TGTTGTCTGT TA CCTCGTTAAGTC TAATTTTGTCTACGTGGCAAT   AG TCACTAAAAAATTAT     GTGGC ATATTTTACAAAATAAAAAT   AGCA      
      ||||||||||||||||||||||||||  ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||       | |||||||||| || |||||||||||| |||||||||||||||||||||   || |||||||||||||||     ||||| ||||||||||||||||||||   ||||       
      ATTCTCATTAAACGCCGTTTTGGGGG  TTGATAGTTAAATGAAC TTTTTTGGTAGGTTGGAGTA AAAACCACCCTTTTGGGAG TTTCATGACAAGGCAAATGT       C ACAGCAGACA GT GGAGCAATTCAG ATTAAAACGGGTGCATCGTTA   TC AGTGATTTTTTAATA     CACCG TATAAAATGTTTTATTTTTA   TTGT      
AATTAT                          --                 A                    A                   A                    ------- C          A  C            A                     CTT  C               AGTTA     A                    TTT    AATTCT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End