Plant MITE

SE4520042

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3130
Cannabis sativa
SE4520042
Mutator
M16
scaffold2211:10565-11347
TTCTAAATG
GGGAAATTTGAAATTCCATGCTTATAATATCTTAATTTTTTTTTTCTTAAATTCATAATTATTAAAATTGGTCATATATGACCACATTACTATTTTCCCACAAATACCCCTCCCATTTAAAAAACTAGAATCAAAAGGCTTAGTTCTCTCTCTCTCCCTCTCGCACGGTACACCCACACCCACCACATCGGCTTCACCTCCGACGACGACGGACGACCACCCAC

Secondary structure and sequence

TSD TIR

5'

3'

TTCTAAAT                                   TTT                                                     --       C                   A     C           G      -TTC                                                                              -  --      -  -   -         -   CGCACAAAAACCATTTTTTTTTGGTTTTTAAGGTCGGGTCCGATGGGCCCATCGGACCCCATCGGACGGGGCATCGGGCTCATTGGACGGGGCATCGAACTCATAACCCGATGCCCCGTCCGATGGGCCC
        GGGAAATTTGAAATTCCATGCTTATAATATCTTAA   TTTTTTTCTTAAATTCATAATTATTAAAATTGGTCATATATGACCACATTACT  ATTTTCC ACAAATACCCCTCCCATTT AAAAA TAGAATCAAAA GCTTAG    TCTCTCTCTCCCTCTCGCACGGTACACCCACACCCACCACATCGGCTTCACCTCCGACGACGACGGACGACCACCCAC AC  TCCGAT CG AGA CCCGCACTG TAT                                                                                                                                  
        |||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||| ||||| ||||||||||| ||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||||| || ||| ||||||||| |||                                                                                                                                  G
        CCCTTTAAACTTTAAGGTACGAATATTATGGAATT   AAAAAAGGGATTTAGGTATTAATAATTTTAACCAGTATATACTGGTGTAATGG  TAAAAGG TGTTTATGGGGAGGGTAAA TTTTT ATTTTAGTTTT CGAATT    AGAGAGAGAGGGAGAGCGTGCCATGTGGGTGTGGGTGGTGTAGTCGAAGTGGAGGCTGCTGCTGCCTGCTGGTGGGTG CG  GGCTAT GT GCG GCTACTGCC GCT                                                                                                                                  
TAAATCTT                                   -TT                                                     AT       -                   C     A           A      TTAA                                                                              G  GT      C  G   T         T   GGTGGGTGGCGGTGGTCGTGGCAATAGCCTGGTGAGGCTAGCTCTGGGCGTGACATAGCGTGTTTTTGGTAAAAAAACCCAAAAATTCCAGCCCAAGCTACCCGGGTAACCTGGGGTAGCCTGCCCCATA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE4520042

TTCTAAATGGGAAATTTGAAATTCCATGCTTATAATATCTTAATTTTTTTTTTCTTAAATTCATAATTATTAAAATTGGTCATATATGACCACATTACTATTTTCCCACAAATACCCCTCCCATTTAAAAAACTAGAATCAAAAGGCTTAGTTCTCTCTCTCTCCCTCTCGCACGGTACACCCACACCCACCACATCGGCTTCACCTCCGACGACGACGGACGACCACCCACACTCCGATCGAGACCCGCACTGTATCGCACAAAAACCATTTTTTTTTGGTTTTTAAGGTCGGGTCCGATGGGCCCATCGGACCCCATCGGACGGGGCATCGGGCTCATTGGACGGGGCATCGAACTCATAACCCGATGCCCCGTCCGATGGGCCCGATACCCCGTCCGATGGGGTCCAATGGGCCCATCGAACCCGACCTTAAAAACCCAAAAAAATGGTTTTTGTGCGATACAGTGCGGGTCTCGATCGGAGTGGTCCGATAACGGTGCTGGTGGCGGTGGGTGGTCGTCCGTCATCGTGCGGTGCTATCGGTGGCGGTGGGTGGTCGTCCGTCGTCGTCGGAGGTGAAGCTGATGTGGTGGGTGTGGGTGTACCGTGCGAGAGGGAGAGAGAGAAATTTTAAGCATTTTGATTTTAATTTTTCAAATGGGAGGGGTATTTGTGGAAAATTAGGTAATGTGGTCATATATGACCAATTTTAATAATTATGGATTTAGGGAAAAAATTTTAAGGTATTATAAGCATGGAATTTCAAATTTCCCTTCTAAAT

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