SE4530043

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3131
  • Cannabis sativa
  • SE4530043
  • hAT
  • Hat4
  • scaffold12141:106-315
  • ACCGAGGT
  • ACCGAGGTCAGGCGCGGCC

Secondary structure and sequence

TSD    TIR
5'



3' 
   GA       CG     -    AATTTAGTGGGCCATAGGGAAAAAAAATATTTTTGGGCCCTCATTTAGAAAAAAATGGTATTTTTCAAAATTGATAAAAAA
ACC  GGTCAGG  CGGCC CTGA                                                                                 
|||  |||||||  ||||| ||||                                                                                 A
TGG  CCAGTCC  GCCGG ACTC                                                                                 
   AG       CG     A    GTATCCGCCCGATCCGGACACGGATCCCGGGTGGATCGAGTGCCCAGGTTTTTTTTAAACAGGGGAAAATTTTAATGTGTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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